DNA Language Models: An Assessment of Pre-Training for Fine-Tuning Tasks

arXiv:2606.30140v1 Announce Type: cross Abstract: Recent breakthroughs in foundation models and Large Language Models (LLMs) have introduced new opportunities for studying and decoding genomic sequences. Several state-of-the-art approaches, such as DNABERT2, rely on transformer-based architectures, while others, such as ConvNova, still build upon more conventional convolutional models. However, systematic benchmark comparisons across these methods remain scarce. Given that transformer-based models require extensive and costly pretraining, it is crucial to evaluate whether their performance gai

Source: arXiv cs.CL — read the full report at the original publisher.

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