Supporting Workflow Reproducibility by Linking Bioinformatics Tools across Papers and Executable Code

arXiv:2603.08195v2 Announce Type: replace Abstract: Motivation: The rapid growth of biological data has intensified the need for transparent, reproducible, and well-documented computational workflows. The ability to clearly connect the steps of a workflow in the code with their description in a paper would improve workflow comprehension, support reproducibility, and facilitate reuse. This task requires the linking of bioinformatics tools in workflow code with their mentions in a published workflow description. Results: We present CoPaLink, an automated approach that integrates three components

Source: arXiv cs.CL — read the full report at the original publisher.

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